Mock Version: 1.2.15 Mock Version: 1.2.15 ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R.spec'], chrootPath='/var/lib/mock/hpc7-openhpc-13-el7-build-36057-50165/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_GB', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=86400logger=uid=497) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R.spec'] with env {'LANG': 'en_GB', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-gnu7-ohpc-3.4.2-1.ohpc.src.rpm Child return code was: 0 LEAVE do --> ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R.spec '], chrootPath='/var/lib/mock/hpc7-openhpc-13-el7-build-36057-50165/root'shell=Falseuid=497env={'LANG': 'en_GB', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=86400private_network=Truelogger=printOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R.spec '] with env {'LANG': 'en_GB', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ysb1jy + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf R-3.4.2 + /usr/bin/gzip -dc 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2013-03-05 23:02 R-3.4.2/po/Makefile.in -rw-r--r-- pd/staff 677 2013-03-05 23:02 R-3.4.2/po/Makefile.win -rw-r--r-- pd/staff 2466 2015-03-18 23:04 R-3.4.2/po/POTFILES -rw-r--r-- pd/staff 1834 2013-03-05 23:02 R-3.4.2/po/README -rw-r--r-- pd/staff 721 2012-07-14 22:05 R-3.4.2/po/THANKS -rw-r--r-- pd/staff 3365 2010-03-17 14:43 R-3.4.2/m4/bigendian.m4 -rw-r--r-- pd/staff 5922 2017-03-23 23:04 R-3.4.2/m4/cairo.m4 -rw-r--r-- pd/staff 7331 2010-03-17 14:43 R-3.4.2/m4/clibs.m4 -rw-r--r-- pd/staff 894 2010-03-17 14:43 R-3.4.2/m4/codeset.m4 -rw-r--r-- pd/staff 22162 2017-03-27 22:15 R-3.4.2/m4/cxx_11.m4 -rw-r--r-- pd/staff 45342 2015-08-17 22:15 R-3.4.2/m4/gettext-lib.m4 -rw-r--r-- pd/staff 69282 2014-11-21 23:15 R-3.4.2/m4/gettext.m4 -rw-r--r-- pd/staff 305772 2016-03-16 23:02 R-3.4.2/m4/libtool.m4 -rw-r--r-- pd/staff 14568 2017-04-01 22:15 R-3.4.2/m4/ltoptions.m4 -rw-r--r-- pd/staff 4388 2016-03-16 23:02 R-3.4.2/m4/ltsugar.m4 -rw-r--r-- pd/staff 703 2016-03-16 23:02 R-3.4.2/m4/ltversion.m4 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2017-07-02 22:15 R-3.4.2/doc/COPYRIGHTS -rw-r--r-- pd/staff 23199 2017-04-19 16:44 R-3.4.2/doc/CRAN_mirrors.csv -rw-r--r-- pd/staff 125806 2017-09-28 07:00 R-3.4.2/doc/FAQ drwxr-xr-x pd/staff 0 2017-09-28 07:04 R-3.4.2/doc/html/ -rw-r--r-- pd/staff 2530 2010-03-17 14:43 R-3.4.2/doc/KEYWORDS -rw-r--r-- pd/staff 3047 2010-03-17 14:43 R-3.4.2/doc/KEYWORDS.db -rw-r--r-- pd/staff 6048 2017-03-23 23:04 R-3.4.2/doc/Makefile.in -rw-r--r-- pd/staff 1507 2017-03-23 23:04 R-3.4.2/doc/Makefile.win drwxr-xr-x pd/staff 0 2017-09-28 07:04 R-3.4.2/doc/manual/ -rw-r--r-- pd/staff 241568 2017-09-28 07:02 R-3.4.2/doc/NEWS -rw-r--r-- pd/staff 93568 2014-03-12 23:03 R-3.4.2/doc/NEWS.0 -rw-r--r-- pd/staff 294277 2014-03-12 23:03 R-3.4.2/doc/NEWS.1 -rw-r--r-- pd/staff 641818 2014-03-12 23:03 R-3.4.2/doc/NEWS.2 -rw-r--r-- pd/staff 302894 2016-03-16 23:04 R-3.4.2/doc/NEWS.2.Rd -rw-r--r-- pd/staff 497464 2017-09-28 07:02 R-3.4.2/doc/NEWS.pdf -rw-r--r-- pd/staff 285831 2017-09-27 22:15 R-3.4.2/doc/NEWS.Rd -rw-r--r-- pd/staff 1622 2010-03-17 14:43 R-3.4.2/doc/R.aux -rw-r--r-- pd/staff 1253 2017-09-28 07:00 R-3.4.2/doc/RESOURCES -rw-r--r-- pd/staff 1363 2016-12-06 23:15 R-3.4.2/doc/Rscript.1 -rw-r--r-- pd/staff 3498 2016-12-21 23:15 R-3.4.2/doc/THANKS -rw-r--r-- pd/staff 320 2010-03-17 14:43 R-3.4.2/doc/manual/dir -rw-r--r-- pd/staff 27123 2012-01-22 23:05 R-3.4.2/doc/manual/epsf.tex drwxr-xr-x pd/staff 0 2013-12-20 23:05 R-3.4.2/doc/manual/images/ -rw-r--r-- pd/staff 361 2010-03-17 14:43 R-3.4.2/doc/manual/ISBN -rw-r--r-- pd/staff 16210 2016-03-16 23:04 R-3.4.2/doc/manual/Makefile.in -rw-r--r-- pd/staff 7833 2015-10-04 22:15 R-3.4.2/doc/manual/Makefile.win -rw-r--r-- pd/staff 5687 2010-03-17 14:43 R-3.4.2/doc/manual/pdfcolor.tex -rw-r--r-- pd/staff 319 2015-03-18 23:04 R-3.4.2/doc/manual/quot.sed -rw-r--r-- pd/staff 244424 2017-09-27 22:15 R-3.4.2/doc/manual/R-admin.texi -rw-r--r-- pd/staff 93402 2017-02-21 23:15 R-3.4.2/doc/manual/R-data.texi -rw-r--r-- pd/staff 1521 2016-02-14 23:15 R-3.4.2/doc/manual/R-defs.texi -rw-r--r-- pd/staff 7825 2015-03-18 23:04 R-3.4.2/doc/manual/R-exts.c -rw-r--r-- pd/staff 2296 2013-05-26 22:05 R-3.4.2/doc/manual/R-exts.R -rw-r--r-- pd/staff 599871 2017-09-18 22:15 R-3.4.2/doc/manual/R-exts.texi -rw-r--r-- pd/staff 152590 2017-05-02 22:15 R-3.4.2/doc/manual/R-FAQ.texi -rw-r--r-- pd/staff 9394 2017-01-30 23:15 R-3.4.2/doc/manual/R-intro.R -rw-r--r-- pd/staff 273668 2017-07-27 22:15 R-3.4.2/doc/manual/R-intro.texi -rw-r--r-- pd/staff 199020 2017-08-02 22:15 R-3.4.2/doc/manual/R-ints.texi -rw-r--r-- pd/staff 179437 2017-03-23 23:04 R-3.4.2/doc/manual/R-lang.texi -rw-r--r-- pd/staff 1057 2015-07-31 22:15 R-3.4.2/doc/manual/README -rw-r--r-- pd/staff 103 2010-03-17 14:43 R-3.4.2/doc/manual/refman.bot -rw-r--r-- pd/staff 2134 2015-07-31 22:15 R-3.4.2/doc/manual/refman.top -rw-r--r-- pd/staff 2515 2016-03-16 23:04 R-3.4.2/doc/manual/resources.texi -rw-r--r-- pd/staff 793 2015-03-18 23:04 R-3.4.2/doc/manual/Rfaq.css -rw-r--r-- pd/staff 937 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2013-12-20 23:05 R-3.4.2/doc/manual/images/QQ.png -rw-r--r-- pd/staff 1972 2016-09-14 22:15 R-3.4.2/doc/html/about.html -rw-r--r-- pd/staff 5430 2016-03-16 23:04 R-3.4.2/doc/html/favicon.ico -rw-r--r-- pd/staff 2152 2016-03-16 23:04 R-3.4.2/doc/html/index-default.html -rw-r--r-- pd/staff 1013 2010-03-17 14:43 R-3.4.2/doc/html/left.jpg -rw-r--r-- pd/staff 15985 2016-03-16 23:04 R-3.4.2/doc/html/logo.jpg -rw-r--r-- pd/staff 2825 2016-03-16 23:04 R-3.4.2/doc/html/Makefile.in -rw-r--r-- pd/staff 356339 2016-10-04 09:15 R-3.4.2/doc/html/NEWS.2.html -rw-r--r-- pd/staff 346849 2017-09-28 07:02 R-3.4.2/doc/html/NEWS.html -rw-r--r-- pd/staff 645 2016-03-16 23:04 R-3.4.2/doc/html/Notes -rw-r--r-- pd/staff 425 2016-03-16 23:04 R-3.4.2/doc/html/packages-head-utf8.html -rw-r--r-- pd/staff 331082 2017-09-28 07:04 R-3.4.2/doc/html/R-admin.html -rw-r--r-- pd/staff 1335 2016-03-16 23:04 R-3.4.2/doc/html/R.css -rw-r--r-- pd/staff 5111 2017-09-28 07:00 R-3.4.2/doc/html/resources.html -rw-r--r-- pd/staff 1022 2010-03-17 14:43 R-3.4.2/doc/html/right.jpg -rw-r--r-- pd/staff 6755 2016-03-16 23:04 R-3.4.2/doc/html/Rlogo.pdf -rw-r--r-- pd/staff 2693 2016-03-16 23:04 R-3.4.2/doc/html/Rlogo.svg -rw-r--r-- pd/staff 610 2016-03-16 23:04 R-3.4.2/doc/html/Search.html -rw-r--r-- pd/staff 7799 2016-03-16 23:04 R-3.4.2/doc/html/SearchOn.html -rw-r--r-- pd/staff 1021 2010-03-17 14:43 R-3.4.2/doc/html/up.jpg + STATUS=0 + '[' 0 -ne 0 ']' + cd R-3.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.OWoghw + umask 022 + cd /builddir/build/BUILD + cd R-3.4.2 + . /opt/ohpc/admin/ohpc/OHPC_setup_compiler gnu7 ++ '[' 1 = 1 ']' ++ OHPC_COMPILER_FAMILY=gnu7 ++ '[' -z gnu7 ']' ++ export toolset=gcc ++ toolset=gcc ++ '[' gnu7 = gnu ']' ++ '[' gnu7 = gnu7 ']' ++ export CC=gcc ++ CC=gcc ++ export CXX=g++ ++ CXX=g++ ++ export FC=gfortran ++ FC=gfortran ++ export F77=gfortran ++ F77=gfortran ++ module purge +++ /opt/ohpc/admin/lmod/lmod/libexec/lmod bash purge ++ eval 'MODULEPATH="/opt/ohpc/pub/modulefiles";' export 'MODULEPATH;' '_ModuleTable001_="X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9vcHQvb2hwYy9wdWIvbW9kdWxlZmlsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsfQ==";' export '_ModuleTable001_;' '_ModuleTable_Sz_="1";' export '_ModuleTable_Sz_;' +++ MODULEPATH=/opt/ohpc/pub/modulefiles +++ export MODULEPATH +++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9vcHQvb2hwYy9wdWIvbW9kdWxlZmlsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsfQ== +++ export _ModuleTable001_ +++ _ModuleTable_Sz_=1 +++ export _ModuleTable_Sz_ +++ : -s sh ++ eval ++ module load gnu7 +++ /opt/ohpc/admin/lmod/lmod/libexec/lmod bash load gnu7 ++ eval '__LMOD_REF_COUNT_INCLUDE="/opt/ohpc/pub/compiler/gcc/7.2.0/include:1";' export '__LMOD_REF_COUNT_INCLUDE;' 'INCLUDE="/opt/ohpc/pub/compiler/gcc/7.2.0/include";' export 'INCLUDE;' '__LMOD_REF_COUNT_LD_LIBRARY_PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/lib64:1";' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/lib64";' export 'LD_LIBRARY_PATH;' 'LMOD_FAMILY_COMPILER="gnu7";' export 'LMOD_FAMILY_COMPILER;' 'LMOD_FAMILY_COMPILER_VERSION="7.2.0";' export 'LMOD_FAMILY_COMPILER_VERSION;' '__LMOD_REF_COUNT_LOADEDMODULES="gnu7/7.2.0:1";' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES="gnu7/7.2.0";' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH="/opt/ohpc/pub/compiler/gcc/7.2.0/share/man:1";' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH="/opt/ohpc/pub/compiler/gcc/7.2.0/share/man";' export 'MANPATH;' 'MODULEPATH="/opt/ohpc/pub/moduledeps/gnu7:/opt/ohpc/pub/modulefiles";' export 'MODULEPATH;' '__LMOD_REF_COUNT_PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1";' export '__LMOD_REF_COUNT_PATH;' 'PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin";' export 'PATH;' '__LMOD_REF_COUNT__LMFILES_="/opt/ohpc/pub/modulefiles/gnu7/7.2.0:1";' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_="/opt/ohpc/pub/modulefiles/gnu7/7.2.0";' export '_LMFILES_;' '_ModuleTable001_="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";' export '_ModuleTable001_;' '_ModuleTable002_="Yy9wdWIvbW9kdWxlZmlsZXMiLH0=";' export '_ModuleTable002_;' '_ModuleTable_Sz_="2";' export '_ModuleTable_Sz_;' +++ __LMOD_REF_COUNT_INCLUDE=/opt/ohpc/pub/compiler/gcc/7.2.0/include:1 +++ export __LMOD_REF_COUNT_INCLUDE +++ INCLUDE=/opt/ohpc/pub/compiler/gcc/7.2.0/include +++ export INCLUDE +++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/opt/ohpc/pub/compiler/gcc/7.2.0/lib64:1 +++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH +++ LD_LIBRARY_PATH=/opt/ohpc/pub/compiler/gcc/7.2.0/lib64 +++ export LD_LIBRARY_PATH +++ LMOD_FAMILY_COMPILER=gnu7 +++ export LMOD_FAMILY_COMPILER +++ LMOD_FAMILY_COMPILER_VERSION=7.2.0 +++ export LMOD_FAMILY_COMPILER_VERSION +++ __LMOD_REF_COUNT_LOADEDMODULES=gnu7/7.2.0:1 +++ export __LMOD_REF_COUNT_LOADEDMODULES +++ LOADEDMODULES=gnu7/7.2.0 +++ export LOADEDMODULES +++ __LMOD_REF_COUNT_MANPATH=/opt/ohpc/pub/compiler/gcc/7.2.0/share/man:1 +++ export __LMOD_REF_COUNT_MANPATH +++ MANPATH=/opt/ohpc/pub/compiler/gcc/7.2.0/share/man +++ export MANPATH +++ MODULEPATH=/opt/ohpc/pub/moduledeps/gnu7:/opt/ohpc/pub/modulefiles +++ export MODULEPATH +++ __LMOD_REF_COUNT_PATH='/opt/ohpc/pub/compiler/gcc/7.2.0/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' +++ export __LMOD_REF_COUNT_PATH +++ PATH=/opt/ohpc/pub/compiler/gcc/7.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin +++ export PATH +++ __LMOD_REF_COUNT__LMFILES_=/opt/ohpc/pub/modulefiles/gnu7/7.2.0:1 +++ export __LMOD_REF_COUNT__LMFILES_ +++ _LMFILES_=/opt/ohpc/pub/modulefiles/gnu7/7.2.0 +++ export _LMFILES_ +++ _ModuleTable001_=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 +++ export _ModuleTable001_ +++ _ModuleTable002_=Yy9wdWIvbW9kdWxlZmlsZXMiLH0= +++ export _ModuleTable002_ +++ _ModuleTable_Sz_=2 +++ export _ModuleTable_Sz_ +++ : -s sh ++ eval + export R_BROWSER=xdg-open + R_BROWSER=xdg-open + export R_PDFVIEWER=xdg-open + R_PDFVIEWER=xdg-open + module load openblas ++ /opt/ohpc/admin/lmod/lmod/libexec/lmod bash load openblas + eval '__LMOD_REF_COUNT_INCLUDE="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/include:1;/opt/ohpc/pub/compiler/gcc/7.2.0/include:1";' export '__LMOD_REF_COUNT_INCLUDE;' 'INCLUDE="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/include:/opt/ohpc/pub/compiler/gcc/7.2.0/include";' export 'INCLUDE;' '__LMOD_REF_COUNT_LD_LIBRARY_PATH="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib:1;/opt/ohpc/pub/compiler/gcc/7.2.0/lib64:1";' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib:/opt/ohpc/pub/compiler/gcc/7.2.0/lib64";' export 'LD_LIBRARY_PATH;' 'LMOD_FAMILY_OPENBLAS="openblas";' export 'LMOD_FAMILY_OPENBLAS;' 'LMOD_FAMILY_OPENBLAS_VERSION="0.2.20";' export 'LMOD_FAMILY_OPENBLAS_VERSION;' '__LMOD_REF_COUNT_LOADEDMODULES="gnu7/7.2.0:1;openblas/0.2.20:1";' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES="gnu7/7.2.0:openblas/0.2.20";' export 'LOADEDMODULES;' 'MODULEPATH="/opt/ohpc/pub/moduledeps/gnu7:/opt/ohpc/pub/modulefiles";' export 'MODULEPATH;' 'OPENBLAS_DIR="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20";' export 'OPENBLAS_DIR;' 'OPENBLAS_INC="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/include";' export 'OPENBLAS_INC;' 'OPENBLAS_LIB="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib";' export 'OPENBLAS_LIB;' '__LMOD_REF_COUNT_PATH="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/bin:1;/opt/ohpc/pub/compiler/gcc/7.2.0/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1";' export '__LMOD_REF_COUNT_PATH;' 'PATH="/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/bin:/opt/ohpc/pub/compiler/gcc/7.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin";' export 'PATH;' '__LMOD_REF_COUNT__LMFILES_="/opt/ohpc/pub/modulefiles/gnu7/7.2.0:1;/opt/ohpc/pub/moduledeps/gnu7/openblas/0.2.20:1";' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_="/opt/ohpc/pub/modulefiles/gnu7/7.2.0:/opt/ohpc/pub/moduledeps/gnu7/openblas/0.2.20";' export '_LMFILES_;' '_ModuleTable001_="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";' export '_ModuleTable001_;' '_ModuleTable002_="PSJvcGVuYmxhcy8wLjIuMjAiLFsibG9hZE9yZGVyIl09Mixwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJvcGVuYmxhcyIsfSx9LG1wYXRoQT17Ii9vcHQvb2hwYy9wdWIvbW9kdWxlZGVwcy9nbnU3IiwiL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvb3B0L29ocGMvcHViL21vZHVsZWZpbGVzIix9";' export '_ModuleTable002_;' '_ModuleTable_Sz_="2";' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_INCLUDE='/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/include:1;/opt/ohpc/pub/compiler/gcc/7.2.0/include:1' ++ export __LMOD_REF_COUNT_INCLUDE ++ INCLUDE=/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/include:/opt/ohpc/pub/compiler/gcc/7.2.0/include ++ export INCLUDE ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH='/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib:1;/opt/ohpc/pub/compiler/gcc/7.2.0/lib64:1' ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib:/opt/ohpc/pub/compiler/gcc/7.2.0/lib64 ++ export LD_LIBRARY_PATH ++ LMOD_FAMILY_OPENBLAS=openblas ++ export LMOD_FAMILY_OPENBLAS ++ LMOD_FAMILY_OPENBLAS_VERSION=0.2.20 ++ export LMOD_FAMILY_OPENBLAS_VERSION ++ __LMOD_REF_COUNT_LOADEDMODULES='gnu7/7.2.0:1;openblas/0.2.20:1' ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=gnu7/7.2.0:openblas/0.2.20 ++ export LOADEDMODULES ++ MODULEPATH=/opt/ohpc/pub/moduledeps/gnu7:/opt/ohpc/pub/modulefiles ++ export MODULEPATH ++ OPENBLAS_DIR=/opt/ohpc/pub/libs/gnu7/openblas/0.2.20 ++ export OPENBLAS_DIR ++ OPENBLAS_INC=/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/include ++ export OPENBLAS_INC ++ OPENBLAS_LIB=/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib ++ export OPENBLAS_LIB ++ __LMOD_REF_COUNT_PATH='/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/bin:1;/opt/ohpc/pub/compiler/gcc/7.2.0/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/bin:/opt/ohpc/pub/compiler/gcc/7.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT__LMFILES_='/opt/ohpc/pub/modulefiles/gnu7/7.2.0:1;/opt/ohpc/pub/moduledeps/gnu7/openblas/0.2.20:1' ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/opt/ohpc/pub/modulefiles/gnu7/7.2.0:/opt/ohpc/pub/moduledeps/gnu7/openblas/0.2.20 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=PSJvcGVuYmxhcy8wLjIuMjAiLFsibG9hZE9yZGVyIl09Mixwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJvcGVuYmxhcyIsfSx9LG1wYXRoQT17Ii9vcHQvb2hwYy9wdWIvbW9kdWxlZGVwcy9nbnU3IiwiL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvb3B0L29ocGMvcHViL21vZHVsZWZpbGVzIix9 ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ++ : -s sh + eval + BLAS='-L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas' + ./configure '--with-lapack=-L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas' '--with-blas=-L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas' --enable-R-shlib --prefix=/opt/ohpc/pub/libs/gnu7/R/3.4.2 --without-system-zlib --without-system-bzlib --without-x LIBnn=lib64 configure: WARNING: unrecognized options: --without-system-zlib, --without-system-bzlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... missing checking for working autoconf... missing checking for working automake... missing checking for working autoheader... missing checking whether ln -s works... yes checking for bison... no checking for byacc... no checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... no checking for pdftex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... no configure: WARNING: you cannot build PDF versions of vignettes and help pages checking for makeindex... no checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... /usr/sbin/install-info checking for texi2dvi... no checking for kpsewhich... no checking for latex inconsolata package... checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... xdg-open checking for xdg-open... no checking for acroread... no checking for acroread4... no checking for xdg-open... no checking for evince... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for okular... no checking for kpdf... no checking for open... no checking for gpdf... no checking for kghostview... no configure: WARNING: I could not determine a PDF viewer checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... gcc -E defining F77 to be gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ -g -O2 can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking for Objective C++ compiler... trying some possibilities checking whether g++ can compile ObjC++... no checking whether can compile ObjC++... no no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking whether rl_callback_sigcleanup exists and is declared... no checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dl.h usability... no checking dl.h presence... no checking for dl.h... no checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/local/lib64 -L/opt/ohpc/pub/compiler/gcc/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -L/opt/ohpc/pub/compiler/gcc/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/ohpc/pub/compiler/gcc/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/local/lib64 -L/opt/ohpc/pub/compiler/gcc/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0 -L/opt/ohpc/pub/compiler/gcc/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/ohpc/pub/compiler/gcc/7.2.0/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking for g++ option to support OpenMP... -fopenmp checking whether we can compute ObjC Make dependencies... no checking whether C runtime needs -D__NO_MATH_INLINES... no checking for xmkmf... no checking whether g++ supports C++98 features by default... no checking whether g++ supports C++98 features with -std=gnu++98... yes checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features by default... yes checking whether g++ supports C++17 features by default... no checking whether g++ supports C++17 features with -std=gnu++17... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rint exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is 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(cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --without-system-zlib, --without-system-bzlib R is now configured for x86_64-pc-linux-gnu Source directory: . Installation directory: /opt/ohpc/pub/libs/gnu7/R/3.4.2 C compiler: gcc -g -O2 Fortran 77 compiler: gfortran -g -O2 Default C++ compiler: g++ -g -O2 C++98 compiler: g++ -std=gnu++98 -g -O2 C++11 compiler: g++ -std=gnu++11 -g -O2 C++14 compiler: g++ -g -O2 C++17 compiler: g++ -std=gnu++17 -g -O2 Fortran 90/95 compiler: gfortran -g -O2 Obj-C compiler: Interfaces supported: tcltk External libraries: readline, BLAS(OpenBLAS), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling Capabilities skipped: Options not enabled: shared BLAS, memory profiling Recommended packages: yes configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of vignettes and help pages configure: WARNING: I could not determine a PDF viewer + make -j16 make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/m4' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/m4' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/tools' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/tools' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc/html' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc/html' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc/manual' make[2]: Nothing to be done for `R'. make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc/manual' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/etc' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/etc' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/share' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/share' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/src' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/scripts' creating src/scripts/R.fe make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/scripts' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/scripts' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/include' mkdir -p -- ../../include make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/include/R_ext' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/include' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regerror.c -o regerror.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regexec.c -o regexec.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c integrate.c -o integrate.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c interv.c -o interv.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c maxcol.c -o maxcol.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c optim.c -o optim.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pretty.c -o pretty.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c uncmin.c -o uncmin.o gfortran -fopenmp -fpic -g -O2 -c dchdc.f -o dchdc.o gfortran -fopenmp -fpic -g -O2 -c dpbfa.f -o dpbfa.o gfortran -fopenmp -fpic -g -O2 -c dpbsl.f -o dpbsl.o gfortran -fopenmp -fpic -g -O2 -c dpoco.f -o dpoco.o gfortran -fopenmp -fpic -g -O2 -c dpodi.f -o dpodi.o gfortran -fopenmp -fpic -g -O2 -c dpofa.f -o dpofa.o gfortran -fopenmp -fpic -g -O2 -c dposl.f -o dposl.o gfortran -fopenmp -fpic -g -O2 -c dqrdc.f -o dqrdc.o gfortran -fopenmp -fpic -g -O2 -c dqrdc2.f -o dqrdc2.o gfortran -fopenmp -fpic -g -O2 -c dqrls.f -o dqrls.o gfortran -fopenmp -fpic -g -O2 -c dqrsl.f -o dqrsl.o gfortran -fopenmp -fpic -g -O2 -c dqrutl.f -o dqrutl.o gfortran -fopenmp -fpic -g -O2 -c dsvdc.f -o dsvdc.o gfortran -fopenmp -fpic -g -O2 -c dtrco.f -o dtrco.o gfortran -fopenmp -fpic -g -O2 -c dtrsl.f -o dtrsl.o ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/appl' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/appl' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/nmath' making mlutils.d from mlutils.c making i1mach.d from i1mach.c making d1mach.d from d1mach.c making fmax2.d from fmax2.c making fmin2.d from fmin2.c making fprec.d from fprec.c making fround.d from fround.c making ftrunc.d from ftrunc.c making sign.d from sign.c making fsign.d from fsign.c making imax2.d from imax2.c making imin2.d from imin2.c making chebyshev.d from chebyshev.c making log1p.d from log1p.c making expm1.d from expm1.c making lgammacor.d from lgammacor.c making gammalims.d from gammalims.c making stirlerr.d from stirlerr.c making bd0.d from bd0.c making gamma.d from gamma.c making lgamma.d from lgamma.c making gamma_cody.d from gamma_cody.c making beta.d from beta.c making lbeta.d from lbeta.c making polygamma.d from polygamma.c making cospi.d from cospi.c making bessel_i.d from bessel_i.c making bessel_j.d from bessel_j.c making bessel_k.d from bessel_k.c making bessel_y.d from bessel_y.c making choose.d from choose.c making snorm.d from snorm.c making sexp.d from sexp.c making dgamma.d from dgamma.c making pgamma.d from pgamma.c making qgamma.d from qgamma.c making rgamma.d from rgamma.c making dbeta.d from dbeta.c making pbeta.d from pbeta.c making qbeta.d from qbeta.c making rbeta.d from rbeta.c making dunif.d from dunif.c making punif.d from punif.c making qunif.d from qunif.c making runif.d from runif.c making dnorm.d from dnorm.c making pnorm.d from pnorm.c making qnorm.d from qnorm.c making rnorm.d from rnorm.c making dlnorm.d from dlnorm.c making plnorm.d from plnorm.c making qlnorm.d from qlnorm.c making rlnorm.d from rlnorm.c making df.d from df.c making pf.d from pf.c making qf.d from qf.c making rf.d from rf.c making dnf.d from dnf.c making dt.d from dt.c making pt.d from pt.c making qt.d from qt.c making rt.d from rt.c making dnt.d from dnt.c making dchisq.d from dchisq.c making pchisq.d from pchisq.c making qchisq.d from qchisq.c making rchisq.d from rchisq.c making rnchisq.d from rnchisq.c making dbinom.d from dbinom.c making pbinom.d from pbinom.c making qbinom.d from qbinom.c making rbinom.d from rbinom.c making rmultinom.d from rmultinom.c making dcauchy.d from dcauchy.c making pcauchy.d from pcauchy.c making qcauchy.d from qcauchy.c making rcauchy.d from rcauchy.c making dexp.d from dexp.c making pexp.d from pexp.c making qexp.d from qexp.c making rexp.d from rexp.c making dgeom.d from dgeom.c making pgeom.d from pgeom.c making qgeom.d from qgeom.c making rgeom.d from rgeom.c making dhyper.d from dhyper.c making phyper.d from phyper.c making qhyper.d from qhyper.c making rhyper.d from rhyper.c making pnbinom.d from pnbinom.c making dnbinom.d from dnbinom.c making qnbinom.d from qnbinom.c making rnbinom.d from rnbinom.c making dpois.d from dpois.c making ppois.d from ppois.c making qpois.d from qpois.c making rpois.d from rpois.c making dweibull.d from dweibull.c making pweibull.d from pweibull.c making qweibull.d from qweibull.c making rweibull.d from rweibull.c making dlogis.d from dlogis.c making plogis.d from plogis.c making qlogis.d from qlogis.c making rlogis.d from rlogis.c making dnchisq.d from dnchisq.c making pnchisq.d from pnchisq.c making qnchisq.d from qnchisq.c making dnbeta.d from dnbeta.c making pnbeta.d from pnbeta.c making qnbeta.d from qnbeta.c making pnf.d from pnf.c making pnt.d from pnt.c making qnf.d from qnf.c making qnt.d from qnt.c making ptukey.d from ptukey.c making qtukey.d from qtukey.c making toms708.d from toms708.c making wilcox.d from wilcox.c making signrank.d from signrank.c make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c mlutils.c -o mlutils.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c d1mach.c -o d1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c i1mach.c -o i1mach.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fmax2.c -o fmax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fmin2.c -o fmin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fprec.c -o fprec.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fround.c -o fround.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c ftrunc.c -o ftrunc.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sign.c -o sign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c fsign.c -o fsign.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c imax2.c -o imax2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c imin2.c -o imin2.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c chebyshev.c -o chebyshev.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c log1p.c -o log1p.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c expm1.c -o expm1.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lgammacor.c -o lgammacor.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gammalims.c -o gammalims.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c stirlerr.c -o stirlerr.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bd0.c -o bd0.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gamma.c -o gamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lgamma.c -o lgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gamma_cody.c -o gamma_cody.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c beta.c -o beta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lbeta.c -o lbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c polygamma.c -o polygamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cospi.c -o cospi.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_i.c -o bessel_i.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_j.c -o bessel_j.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_k.c -o bessel_k.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bessel_y.c -o bessel_y.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c choose.c -o choose.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c snorm.c -o snorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sexp.c -o sexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dgamma.c -o dgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pgamma.c -o pgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qgamma.c -o qgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rgamma.c -o rgamma.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dbeta.c -o dbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pbeta.c -o pbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qbeta.c -o qbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rbeta.c -o rbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dunif.c -o dunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c punif.c -o punif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qunif.c -o qunif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c runif.c -o runif.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnorm.c -o dnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnorm.c -o pnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnorm.c -o qnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rnorm.c -o rnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dlnorm.c -o dlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plnorm.c -o plnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qlnorm.c -o qlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rlnorm.c -o rlnorm.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c df.c -o df.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pf.c -o pf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qf.c -o qf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rf.c -o rf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnf.c -o dnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dt.c -o dt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pt.c -o pt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qt.c -o qt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rt.c -o rt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnt.c -o dnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dchisq.c -o dchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pchisq.c -o pchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qchisq.c -o qchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rchisq.c -o rchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rnchisq.c -o rnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dbinom.c -o dbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pbinom.c -o pbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qbinom.c -o qbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rbinom.c -o rbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rmultinom.c -o rmultinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dcauchy.c -o dcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pcauchy.c -o pcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qcauchy.c -o qcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rcauchy.c -o rcauchy.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dexp.c -o dexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pexp.c -o pexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qexp.c -o qexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rexp.c -o rexp.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dgeom.c -o dgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pgeom.c -o pgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qgeom.c -o qgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rgeom.c -o rgeom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dhyper.c -o dhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c phyper.c -o phyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qhyper.c -o qhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rhyper.c -o rhyper.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnbinom.c -o dnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnbinom.c -o pnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnbinom.c -o qnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rnbinom.c -o rnbinom.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dpois.c -o dpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c ppois.c -o ppois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qpois.c -o qpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rpois.c -o rpois.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dweibull.c -o dweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pweibull.c -o pweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qweibull.c -o qweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rweibull.c -o rweibull.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dlogis.c -o dlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plogis.c -o plogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qlogis.c -o qlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rlogis.c -o rlogis.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnchisq.c -o dnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnchisq.c -o pnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnchisq.c -o qnchisq.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dnbeta.c -o dnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnbeta.c -o pnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnbeta.c -o qnbeta.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnf.c -o pnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c pnt.c -o pnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnf.c -o qnf.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qnt.c -o qnt.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c ptukey.c -o ptukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qtukey.c -o qtukey.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c toms708.c -o toms708.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c wilcox.c -o wilcox.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/nmath' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/nmath' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/unix' config.status: creating src/unix/Makefile make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/unix' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/unix' making Rembedded.d from Rembedded.c making dynload.d from dynload.c making system.d from system.c making sys-unix.d from sys-unix.c making sys-std.d from sys-std.c making X11.d from X11.c make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rembedded.c -o Rembedded.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dynload.c -o dynload.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c system.c -o system.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sys-unix.c -o sys-unix.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sys-std.c -o sys-std.o gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/unix' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -L/usr/local/lib64 -DR_HOME='"/builddir/build/BUILD/R-3.4.2"' \ -o Rscript ./Rscript.c make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/unix' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/unix' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' config.status: creating src/main/Makefile make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' making CommandLineArgs.d from CommandLineArgs.c making Rdynload.d from Rdynload.c making Renviron.d from Renviron.c making RNG.d from RNG.c making agrep.d from agrep.c making apply.d from apply.c making arithmetic.d from arithmetic.c making array.d from array.c making attrib.d from attrib.c making bind.d from bind.c making builtin.d from builtin.c making character.d from character.c making coerce.d from coerce.c making colors.d from colors.c making complex.d from complex.c making connections.d from connections.c making context.d from context.c making cum.d from cum.c making dcf.d from dcf.c making datetime.d from datetime.c making debug.d from debug.c making deparse.d from deparse.c making devices.d from devices.c making dotcode.d from dotcode.c making dounzip.d from dounzip.c making dstruct.d from dstruct.c making duplicate.d from duplicate.c making edit.d from edit.c making engine.d from engine.c making envir.d from envir.c making errors.d from errors.c making eval.d from eval.c making format.d from format.c making gevents.d from gevents.c making gram.d from gram.c making gram-ex.d from gram-ex.c making graphics.d from graphics.c making grep.d from grep.c making identical.d from identical.c making inlined.d from inlined.c making inspect.d from inspect.c making internet.d from internet.c making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c making logic.d from logic.c making main.d from main.c making mapply.d from mapply.c making match.d from match.c making memory.d from memory.c making names.d from names.c making objects.d from objects.c making options.d from options.c making paste.d from paste.c making platform.d from platform.c making plot.d from plot.c making plot3d.d from plot3d.c making plotmath.d from plotmath.c making print.d from print.c making printarray.d from printarray.c making printvector.d from printvector.c making printutils.d from printutils.c making qsort.d from qsort.c making radixsort.d from radixsort.c making random.d from random.c making raw.d from raw.c making registration.d from registration.c making rlocale.d from rlocale.c making relop.d from relop.c making saveload.d from saveload.c making scan.d from scan.c making seq.d from seq.c making serialize.d from serialize.c making sort.d from sort.c making source.d from source.c making split.d from split.c making sprintf.d from sprintf.c making startup.d from startup.c making subassign.d from subassign.c making subscript.d from subscript.c making subset.d from subset.c making summary.d from summary.c making sysutils.d from sysutils.c making times.d from times.c making unique.d from unique.c making util.d from util.c making version.d from version.c making g_alab_her.d from g_alab_her.c making g_cntrlify.d from g_cntrlify.c making g_fontdb.d from g_fontdb.c making g_her_glyph.d from g_her_glyph.c making Rmain.d from Rmain.c making alloca.d from alloca.c making mkdtemp.d from mkdtemp.c making strdup.d from strdup.c making strncasecmp.d from strncasecmp.c make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c CommandLineArgs.c -o CommandLineArgs.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rdynload.c -o Rdynload.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Renviron.c -o Renviron.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c RNG.c -o RNG.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c agrep.c -o agrep.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c apply.c -o apply.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c arithmetic.c -o arithmetic.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c array.c -o array.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c attrib.c -o attrib.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c bind.c -o bind.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c builtin.c -o builtin.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c character.c -o character.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c coerce.c -o coerce.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c colors.c -o colors.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c complex.c -o complex.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c connections.c -o connections.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c context.c -o context.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cum.c -o cum.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dcf.c -o dcf.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c datetime.c -o datetime.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c debug.c -o debug.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c deparse.c -o deparse.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c devices.c -o devices.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dotcode.c -o dotcode.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dounzip.c -o dounzip.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c dstruct.c -o dstruct.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c duplicate.c -o duplicate.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c edit.c -o edit.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c engine.c -o engine.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c envir.c -o envir.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c errors.c -o errors.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c eval.c -o eval.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c format.c -o format.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gevents.c -o gevents.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gram.c -o gram.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c gram-ex.c -o gram-ex.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c graphics.c -o graphics.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c grep.c -o grep.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c identical.c -o identical.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c inlined.c -o inlined.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c inspect.c -o inspect.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c internet.c -o internet.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c iosupport.c -o iosupport.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c lapack.c -o lapack.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c list.c -o list.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c localecharset.c -o localecharset.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c logic.c -o logic.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c main.c -o main.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c mapply.c -o mapply.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c match.c -o match.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c memory.c -o memory.o main.c: In function 'dummy_ii': main.c:1669:12: warning: function returns address of local variable [-Wreturn-local-addr] return (uintptr_t) ⅈ ^~~~~~~~~~~~~~~ gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c names.c -o names.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c objects.c -o objects.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c options.c -o options.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c paste.c -o paste.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c platform.c -o platform.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plot.c -o plot.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plot3d.c -o plot3d.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c plotmath.c -o plotmath.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c print.c -o print.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c printarray.c -o printarray.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c printvector.c -o printvector.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c printutils.c -o printutils.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c qsort.c -o qsort.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c radixsort.c -o radixsort.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c random.c -o random.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c raw.c -o raw.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c registration.c -o registration.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c relop.c -o relop.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rlocale.c -o rlocale.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c saveload.c -o saveload.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c scan.c -o scan.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c seq.c -o seq.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c serialize.c -o serialize.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sort.c -o sort.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c source.c -o source.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c split.c -o split.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sprintf.c -o sprintf.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c startup.c -o startup.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c subassign.c -o subassign.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c subscript.c -o subscript.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c subset.c -o subset.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c summary.c -o summary.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c sysutils.c -o sysutils.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c times.c -o times.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c unique.c -o unique.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c util.c -o util.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c version.c -o version.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_alab_her.c -o g_alab_her.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_cntrlify.c -o g_cntrlify.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_fontdb.c -o g_fontdb.o gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c g_her_glyph.c -o g_her_glyph.o gfortran -fopenmp -fpic -g -O2 -c xxxpr.f -o xxxpr.o gcc -shared -fopenmp -L/usr/local/lib64 -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -lgfortran -lm -lquadmath -lreadline -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' mkdir -p -- /builddir/build/BUILD/R-3.4.2/bin/exec mkdir -p -- /builddir/build/BUILD/R-3.4.2/lib make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L../../lib -L/usr/local/lib64 -o R.bin Rmain.o -lR make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' making Rhttpd.d from Rhttpd.c making Rsock.d from Rsock.c making Lapack.d from Lapack.c making internet.d from internet.c making libcurl.d from libcurl.c making nanoftp.d from nanoftp.c making nanohttp.d from nanohttp.c making sock.d from sock.c making sockconn.d from sockconn.c make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Lapack.c -o Lapack.o make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c Rsock.c -o Rsock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c internet.c -o internet.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c libcurl.c -o libcurl.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c nanoftp.c -o nanoftp.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c nanohttp.c -o nanohttp.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c sock.c -o sock.o gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c sockconn.c -o sockconn.o gcc -shared -L../../../lib -L/usr/local/lib64 -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' mkdir -p -- /builddir/build/BUILD/R-3.4.2/modules make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' gcc -shared -L../../../lib -L/usr/local/lib64 -o lapack.so Lapack.o -lR -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -lgfortran -lm -lquadmath make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' mkdir -p -- ../../library make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/profile' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/translations' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/translations' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/translations' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/base' building package 'base' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/base' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/base' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tools/src' making text.d from text.c making init.d from init.c making Rmd5.d from Rmd5.c making md5.d from md5.c making signals.d from signals.c making install.d from install.c making getfmts.d from getfmts.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c text.c -o text.o making http.d from http.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o making gramLatex.d from gramLatex.c making gramRd.d from gramRd.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c Rmd5.c -o Rmd5.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c md5.c -o md5.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c signals.c -o signals.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c install.c -o install.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getfmts.c -o getfmts.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c http.c -o http.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gramLatex.c -o gramLatex.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gramRd.c -o gramRd.o gcc -shared -L../../../../lib -L/usr/local/lib64 -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tools/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tools/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/compiler' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/compiler' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/compiler' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/base' byte-compiling package 'base' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/base' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tools' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' mkdir -p -- ../../../library/utils/R mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/utils/src' making init.d from init.c making io.d from io.c making size.d from size.c making sock.d from sock.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o making stubs.d from stubs.c making utils.d from utils.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c io.c -o io.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c sock.c -o sock.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stubs.c -o stubs.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L../../../../lib -L/usr/local/lib64 -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/utils/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/utils/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/utils' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src' making axis_scales.d from axis_scales.c making chull.d from chull.c making devices.d from devices.c making init.d from init.c making stubs.d from stubs.c making colors.d from colors.c making devCairo.d from devCairo.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c axis_scales.c -o axis_scales.o making devPicTeX.d from devPicTeX.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c chull.c -o chull.o making devPS.d from devPS.c making devQuartz.d from devQuartz.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c devices.c -o devices.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c stubs.c -o stubs.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c colors.c -o colors.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c devCairo.c -o devCairo.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c devPicTeX.c -o devPicTeX.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c devPS.c -o devPS.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -g -O2 -c devQuartz.c -o devQuartz.o gcc -shared -L../../../../lib -L/usr/local/lib64 -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[8]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src/cairo' make[9]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/libpng15 -I/usr/include/libdrm -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c cairoBM.c -o cairoBM.o (cd ../../../../../src/modules/X11; make rbitmap.o) make[10]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/X11' gcc -I/usr/include/libpng15 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/libpng15 -I/usr/include/libdrm -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c rbitmap.c -o rbitmap.o make[10]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/X11' gcc -shared -L../../../../../lib -L/usr/local/lib64 -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng15 -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng15 -lz -lcairo -L../../../../../lib -lR -lm make[9]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src/cairo' make[8]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src/cairo' make[7]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src/cairo' make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grDevices' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics/src' making init.d from init.c making base.d from base.c making graphics.d from graphics.c making par.d from par.c making plot.d from plot.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o making plot3d.d from plot3d.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base.c -o base.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c graphics.c -o graphics.o making stem.d from stem.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c par.c -o par.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c plot.c -o plot.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c plot3d.c -o plot3d.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stem.c -o stem.o gcc -shared -L../../../../lib -L/usr/local/lib64 -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/graphics' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats/src' making init.d from init.c making kmeans.d from kmeans.c making ansari.d from ansari.c making bandwidths.d from bandwidths.c making chisqsim.d from chisqsim.c making d2x2xk.d from d2x2xk.c making fexact.d from fexact.c making kendall.d from kendall.c making ks.d from ks.c making line.d from line.c making smooth.d from smooth.c making prho.d from prho.c making swilk.d from swilk.c making ksmooth.d from ksmooth.c making loessc.d from loessc.c making monoSpl.d from monoSpl.c making isoreg.d from isoreg.c making Srunmed.d from Srunmed.c making dblcen.d from dblcen.c making distance.d from distance.c making hclust-utils.d from hclust-utils.c making nls.d from nls.c making rWishart.d from rWishart.c making HoltWinters.d from HoltWinters.c making PPsum.d from PPsum.c making arima.d from arima.c making filter.d from filter.c making burg.d from burg.c making mAR.d from mAR.c making pacf.d from pacf.c making starma.d from starma.c making port.d from port.c making family.d from family.c making sbart.d from sbart.c making approx.d from approx.c making loglin.d from loglin.c making lowess.d from lowess.c making massdist.d from massdist.c making splines.d from splines.c making lm.d from lm.c making complete_cases.d from complete_cases.c making cov.d from cov.c making deriv.d from deriv.c making fft.d from fft.c making fourier.d from fourier.c making model.d from model.c making optim.d from optim.c making optimize.d from optimize.c making integrate.d from integrate.c making random.d from random.c making distn.d from distn.c making zeroin.d from zeroin.c making rcont.d from rcont.c making influence.d from influence.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c kmeans.c -o kmeans.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c ansari.c -o ansari.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c bandwidths.c -o bandwidths.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c chisqsim.c -o chisqsim.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c d2x2xk.c -o d2x2xk.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c fexact.c -o fexact.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c kendall.c -o kendall.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c ks.c -o ks.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c line.c -o line.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c smooth.c -o smooth.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c prho.c -o prho.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c swilk.c -o swilk.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c ksmooth.c -o ksmooth.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c loessc.c -o loessc.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c monoSpl.c -o monoSpl.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c isoreg.c -o isoreg.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c Srunmed.c -o Srunmed.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c dblcen.c -o dblcen.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c distance.c -o distance.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c hclust-utils.c -o hclust-utils.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c nls.c -o nls.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c rWishart.c -o rWishart.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c HoltWinters.c -o HoltWinters.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c PPsum.c -o PPsum.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c arima.c -o arima.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c burg.c -o burg.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c filter.c -o filter.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c mAR.c -o mAR.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c pacf.c -o pacf.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c starma.c -o starma.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c port.c -o port.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c family.c -o family.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c sbart.c -o sbart.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c approx.c -o approx.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c loglin.c -o loglin.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c lowess.c -o lowess.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c massdist.c -o massdist.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c splines.c -o splines.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c lm.c -o lm.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c complete_cases.c -o complete_cases.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c cov.c -o cov.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c deriv.c -o deriv.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c fft.c -o fft.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c fourier.c -o fourier.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c model.c -o model.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c optim.c -o optim.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c optimize.c -o optimize.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c integrate.c -o integrate.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c random.c -o random.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c distn.c -o distn.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c zeroin.c -o zeroin.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c rcont.c -o rcont.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -g -O2 -c influence.c -o influence.o gfortran -fvisibility=hidden -fpic -g -O2 -c bsplvd.f -o bsplvd.o gfortran -fvisibility=hidden -fpic -g -O2 -c bvalue.f -o bvalue.o gfortran -fvisibility=hidden -fpic -g -O2 -c bvalus.f -o bvalus.o gfortran -fvisibility=hidden -fpic -g -O2 -c loessf.f -o loessf.o gfortran -fvisibility=hidden -fpic -g -O2 -c ppr.f -o ppr.o gfortran -fvisibility=hidden -fpic -g -O2 -c qsbart.f -o qsbart.o gfortran -fvisibility=hidden -fpic -g -O2 -c sgram.f -o sgram.o gfortran -fvisibility=hidden -fpic -g -O2 -c sinerp.f -o sinerp.o gfortran -fvisibility=hidden -fpic -g -O2 -c sslvrg.f -o sslvrg.o gfortran -fvisibility=hidden -fpic -g -O2 -c stxwx.f -o stxwx.o gfortran -fvisibility=hidden -fpic -g -O2 -c hclust.f -o hclust.o gfortran -fvisibility=hidden -fpic -g -O2 -c kmns.f -o kmns.o gfortran -fvisibility=hidden -fpic -g -O2 -c eureka.f -o eureka.o gfortran -fvisibility=hidden -fpic -g -O2 -c stl.f -o stl.o gfortran -fpic -g -O2 -ffloat-store -c portsrc.f -o portsrc.o gfortran -fvisibility=hidden -fpic -g -O2 -c lminfl.f -o lminfl.o gcc -shared -L../../../../lib -L/usr/local/lib64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/datasets' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/datasets' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c making init.d from init.c making methods_list_dispatch.d from methods_list_dispatch.c making slot.d from slot.c making class_support.d from class_support.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c do_substitute_direct.c -o do_substitute_direct.o making tests.d from tests.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o making utils.d from utils.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c methods_list_dispatch.c -o methods_list_dispatch.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slot.c -o slot.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c class_support.c -o class_support.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tests.c -o tests.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o gcc -shared -L../../../../lib -L/usr/local/lib64 -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/methods/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/methods/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/methods' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grid/src' making gpar.d from gpar.c making just.d from just.c making grid.d from grid.c making matrix.d from matrix.c making layout.d from layout.c making register.d from register.c making state.d from state.c gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gpar.c -o gpar.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c grid.c -o grid.o making unit.d from unit.c making util.d from util.c making viewport.d from viewport.c gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c just.c -o just.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c layout.c -o layout.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c matrix.c -o matrix.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c state.c -o state.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unit.c -o unit.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c util.c -o util.o gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c viewport.c -o viewport.o gcc -shared -L../../../../lib -L/usr/local/lib64 -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grid/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grid/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/grid' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/splines/src' gcc -I../../../../include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c splines.c -o splines.o making splines.d from splines.c gcc -shared -L../../../../lib -L/usr/local/lib64 -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/splines/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/splines/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/splines' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats4' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats4' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/stats4' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk/src' gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tcltk.c -o tcltk.o making init.d from init.c making tcltk.d from tcltk.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tcltk_unix.c -o tcltk_unix.o making tcltk_unix.d from tcltk_unix.c gcc -shared -L../../../../lib -L/usr/local/lib64 -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.5 -L/usr/lib64 -ltk8.5 -lX11 -lm -L../../../../lib -lR make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk/src' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/tcltk' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' make[5]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel/src' gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rngstream.c -o rngstream.o making init.d from init.c gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fork.c -o fork.o making rngstream.d from rngstream.c making fork.d from fork.c gcc -shared -L../../../../lib -L/usr/local/lib64 -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel/src' make[5]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel/src' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' make[4]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/parallel' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/base' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/tests' make[1]: Nothing to be done for `R'. make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/tests' you should 'make docs' now ... make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2' configuring Java ... *** Cannot find any Java interpreter *** Please make sure 'java' is on your PATH or set JAVA_HOME correspondingly make[1]: [stamp-java] Error 1 (ignored) make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2' creating doc/NEWS 'pdflatex' is needed to make NEWS.pdf but is missing on your system. make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-lang.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc/html' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc/html' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc/manual' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' installing parsed Rd make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' compiler stats4 splines parallel tcltk datasets tools grid grDevices graphics methods utils stats base make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' building/updating package metadata ... make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' writing package indices make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/Recommended' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library/Recommended' begin installing recommended package MASS begin installing recommended package codetools begin installing recommended package lattice begin installing recommended package foreign begin installing recommended package KernSmooth begin installing recommended package nnet begin installing recommended package rpart begin installing recommended package spatial * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpxsbvOF/R.INSTALL681d61aa9172/KernSmooth/src' gfortran -fpic -g -O2 -c blkest.f -o blkest.o gfortran -fpic -g -O2 -c cp.f -o cp.o gfortran -fpic -g -O2 -c dgedi.f -o dgedi.o gfortran -fpic -g -O2 -c dgefa.f -o dgefa.o gfortran -fpic -g -O2 -c dgesl.f -o dgesl.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gfortran -fpic -g -O2 -c linbin.f -o linbin.o gfortran -fpic -g -O2 -c linbin2D.f -o linbin2D.o gfortran -fpic -g -O2 -c locpoly.f -o locpoly.o gfortran -fpic -g -O2 -c rlbin.f -o rlbin.o gfortran -fpic -g -O2 -c sdiag.f -o sdiag.o gfortran -fpic -g -O2 -c sstdiag.f -o sstdiag.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpxsbvOF/R.INSTALL681d61aa9172/KernSmooth/src' installing to /builddir/build/BUILD/R-3.4.2/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpvEWgNF/R.INSTALL682b604e6923/spatial/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c krc.c -o krc.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pps.c -o pps.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o spatial.so init.o krc.o pps.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpvEWgNF/R.INSTALL682b604e6923/spatial/src' installing to /builddir/build/BUILD/R-3.4.2/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/Rtmp89BrEC/R.INSTALL6827d0220be/nnet/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nnet.c -o nnet.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o nnet.so nnet.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/Rtmp89BrEC/R.INSTALL6827d0220be/nnet/src' installing to /builddir/build/BUILD/R-3.4.2/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpTBV1JF/R.INSTALL682568cb4743/foreign/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c R_systat.c -o R_systat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rdbfread.c -o Rdbfread.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rdbfwrite.c -o Rdbfwrite.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SASxport.c -o SASxport.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c avl.c -o avl.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dbfopen.c -o dbfopen.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file-handle.c -o file-handle.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c format.c -o format.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c minitab.c -o minitab.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pfm-read.c -o pfm-read.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sfm-read.c -o sfm-read.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spss.c -o spss.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stataread.c -o stataread.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpTBV1JF/R.INSTALL682568cb4743/foreign/src' installing to /builddir/build/BUILD/R-3.4.2/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpRGqVJF/R.INSTALL68292b042ea/rpart/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anova.c -o anova.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anovapred.c -o anovapred.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c branch.c -o branch.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bsplit.c -o bsplit.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c choose_surg.c -o choose_surg.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fix_cp.c -o fix_cp.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c free_tree.c -o free_tree.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gini.c -o gini.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c graycode.c -o graycode.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c insert_split.c -o insert_split.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c make_cp_list.c -o make_cp_list.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c make_cp_table.c -o make_cp_table.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mysort.c -o mysort.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nodesplit.c -o nodesplit.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c partition.c -o partition.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poisson.c -o poisson.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pred_rpart.c -o pred_rpart.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c print_tree.c -o print_tree.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpart.c -o rpart.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpart_callback.c -o rpart_callback.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpartexp.c -o rpartexp.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpartexp2.c -o rpartexp2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpcountup.c -o rpcountup.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rpmatrix.c -o rpmatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rundown.c -o rundown.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rundown2.c -o rundown2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c surrogate.c -o surrogate.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c usersplit.c -o usersplit.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xpred.c -o xpred.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xval.c -o xval.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpRGqVJF/R.INSTALL68292b042ea/rpart/src' installing to /builddir/build/BUILD/R-3.4.2/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpHMEN6C/R.INSTALL681f78d3950d/MASS/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c MASS.c -o MASS.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lqs.c -o lqs.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o MASS.so MASS.o lqs.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpHMEN6C/R.INSTALL681f78d3950d/MASS/src' installing to /builddir/build/BUILD/R-3.4.2/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) begin installing recommended package cluster begin installing recommended package class * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpcUc4Cn/R.INSTALL695b4dfde687/class/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c class.c -o class.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o class.so class.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpcUc4Cn/R.INSTALL695b4dfde687/class/src' installing to /builddir/build/BUILD/R-3.4.2/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/Rtmp69RN6C/R.INSTALL681b1858a678/lattice/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c threeDplot.c -o threeDplot.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o lattice.so init.o threeDplot.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/Rtmp69RN6C/R.INSTALL681b1858a678/lattice/src' installing to /builddir/build/BUILD/R-3.4.2/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (lattice) begin installing recommended package Matrix begin installing recommended package nlme * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpIJkzGn/R.INSTALL6959261b8079/cluster/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c clara.c -o clara.o gfortran -fpic -g -O2 -c daisy.f -o daisy.o gfortran -fpic -g -O2 -c dysta.f -o dysta.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c fanny.c -o fanny.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mona.c -o mona.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pam.c -o pam.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sildist.c -o sildist.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spannel.c -o spannel.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c twins.c -o twins.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpIJkzGn/R.INSTALL6959261b8079/cluster/src' installing to /builddir/build/BUILD/R-3.4.2/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/Rtmpkth5Yv/R.INSTALL69ab2c3362d9/nlme/src' gfortran -fpic -g -O2 -c chol.f -o chol.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c corStruct.c -o corStruct.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c gnls.c -o gnls.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c matrix.c -o matrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlOptimizer.c -o nlOptimizer.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlme.c -o nlme.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nlmefit.c -o nlmefit.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c pdMat.c -o pdMat.o gfortran -fpic -g -O2 -c rs.f -o rs.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/Rtmpkth5Yv/R.INSTALL69ab2c3362d9/nlme/src' installing to /builddir/build/BUILD/R-3.4.2/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c CHMfactor.c -o CHMfactor.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c Csparse.c -o Csparse.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c TMatrix_as.c -o TMatrix_as.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c Tsparse.c -o Tsparse.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c Mutils.c -o Mutils.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c chm_common.c -o chm_common.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c cs.c -o cs.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c cs_utils.c -o cs_utils.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dense.c -o dense.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dgCMatrix.c -o dgCMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dgTMatrix.c -o dgTMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dgeMatrix.c -o dgeMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dpoMatrix.c -o dpoMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dppMatrix.c -o dppMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dsCMatrix.c -o dsCMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dsyMatrix.c -o dsyMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dspMatrix.c -o dspMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtCMatrix.c -o dtCMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtTMatrix.c -o dtTMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtrMatrix.c -o dtrMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c dtpMatrix.c -o dtpMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c factorizations.c -o factorizations.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c ldense.c -o ldense.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c lgCMatrix.c -o lgCMatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c sparseQR.c -o sparseQR.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c abIndex.c -o abIndex.o make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD' ( cd Lib ; make clean ) make[5]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD/Lib' make[5]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD' make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD' ( cd Source ; make clean ) make[5]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD/Source' make[5]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD/Source' make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD' make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD' ( cd Source ; make clean ) make[5]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD/Source' make[5]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD/Source' make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD' make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/SuiteSparse_config' make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/SuiteSparse_config' make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD' ( cd Lib ; make ) make[5]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD/Lib' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_aat.c -o cholmod_aat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_add.c -o cholmod_add.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_band.c -o cholmod_band.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_common.c -o cholmod_common.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_complex.c -o cholmod_complex.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_copy.c -o cholmod_copy.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_dense.c -o cholmod_dense.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_error.c -o cholmod_error.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_factor.c -o cholmod_factor.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_memory.c -o cholmod_memory.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Core/cholmod_version.c -o cholmod_version.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_check.c -o cholmod_check.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_read.c -o cholmod_read.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Check/cholmod_write.c -o cholmod_write.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Modify/cholmod_updown.c -o cholmod_updown.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fpic -g -O2 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/CHOLMOD' make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD' ( cd Source ; make lib ) make[5]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD/Source' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c colamd_global.c -o colamd_global.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -c colamd.c -o colamd.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[5]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD/Source' make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/COLAMD' make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD' ( cd Source ; make lib ) make[5]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD/Source' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_1.c -o amd_i_1.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_2.c -o amd_i_2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_order.c -o amd_i_order.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_control.c -o amd_i_control.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_info.c -o amd_i_info.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDINT -c amd_global.c -o amd_i_global.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fpic -g -O2 -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[5]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD/Source' make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/AMD' make[4]: Entering directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/SuiteSparse_config' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -DNTIMER -I/usr/local/include -fpic -g -O2 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src/SuiteSparse_config' gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -lgfortran -lm -lquadmath -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/Rtmpm9zQRv/R.INSTALL69a9d002d4e/Matrix/src' installing to /builddir/build/BUILD/R-3.4.2/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices Loading required package: Matrix ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) begin installing recommended package survival begin installing recommended package mgcv * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/Rtmp2HDEwb/R.INSTALL6c354fcd6bad/survival/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agexact.c -o agexact.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agfit4.c -o agfit4.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agfit5.c -o agfit5.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agmart.c -o agmart.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agmart2.c -o agmart2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agmart3.c -o agmart3.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agscore.c -o agscore.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agsurv3.c -o agsurv3.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agsurv4.c -o agsurv4.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c agsurv5.c -o agsurv5.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chinv2.c -o chinv2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chinv3.c -o chinv3.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cholesky2.c -o cholesky2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cholesky3.c -o cholesky3.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chsolve2.c -o chsolve2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chsolve3.c -o chsolve3.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c concordance1.c -o concordance1.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cox_Rcallback.c -o cox_Rcallback.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxcount1.c -o coxcount1.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxdetail.c -o coxdetail.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxexact.c -o coxexact.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxfit5.c -o coxfit5.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxfit6.c -o coxfit6.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxmart.c -o coxmart.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxmart2.c -o coxmart2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxph_wtest.c -o coxph_wtest.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxsafe.c -o coxsafe.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxscho.c -o coxscho.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coxscore.c -o coxscore.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dmatrix.c -o dmatrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c doloop.c -o doloop.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c finegray.c -o finegray.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pyears1.c -o pyears1.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pyears2.c -o pyears2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pyears3b.c -o pyears3b.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pystep.c -o pystep.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survConcordance.c -o survConcordance.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survdiff2.c -o survdiff2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survfit4.c -o survfit4.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survfitci.c -o survfitci.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survpenal.c -o survpenal.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survreg6.c -o survreg6.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survreg7.c -o survreg7.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survregc1.c -o survregc1.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survregc2.c -o survregc2.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c survsplit.c -o survsplit.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tmerge.c -o tmerge.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/Rtmp2HDEwb/R.INSTALL6c354fcd6bad/survival/src' installing to /builddir/build/BUILD/R-3.4.2/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) begin installing recommended package boot * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/tmp/RtmpB8M8La/R.INSTALL6c3615ae58c1/mgcv/src' gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c coxph.c -o coxph.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c discrete.c -o discrete.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c gdi.c -o gdi.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c init.c -o init.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c magic.c -o magic.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mat.c -o mat.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c matrix.c -o matrix.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mgcv.c -o mgcv.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c misc.c -o misc.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c mvn.c -o mvn.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c qp.c -o qp.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c soap.c -o soap.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c sparse-smooth.c -o sparse-smooth.o gcc -I/builddir/build/BUILD/R-3.4.2/include -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -c tprs.c -o tprs.o gcc -shared -L/builddir/build/BUILD/R-3.4.2/lib -L/usr/local/lib64 -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -L/opt/ohpc/pub/libs/gnu7/openblas/0.2.20/lib -lopenblas -lgfortran -lm -lquadmath -fopenmp -L/builddir/build/BUILD/R-3.4.2/lib -lR make[3]: Leaving directory `/tmp/RtmpB8M8La/R.INSTALL6c3615ae58c1/mgcv/src' installing to /builddir/build/BUILD/R-3.4.2/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/Recommended' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library/Recommended' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' 'pdflatex' is needed to make vignettes but is missing on your system. make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.cYGR7e + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 ++ dirname /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 + cd R-3.4.2 + . /opt/ohpc/admin/ohpc/OHPC_setup_compiler gnu7 ++ '[' 1 = 1 ']' ++ OHPC_COMPILER_FAMILY=gnu7 ++ '[' -z gnu7 ']' ++ export toolset=gcc ++ toolset=gcc ++ '[' gnu7 = gnu ']' ++ '[' gnu7 = gnu7 ']' ++ export CC=gcc ++ CC=gcc ++ export CXX=g++ ++ CXX=g++ ++ export FC=gfortran ++ FC=gfortran ++ export F77=gfortran ++ F77=gfortran ++ module purge +++ /opt/ohpc/admin/lmod/lmod/libexec/lmod bash purge ++ eval 'MODULEPATH="/opt/ohpc/pub/modulefiles";' export 'MODULEPATH;' '_ModuleTable001_="X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9vcHQvb2hwYy9wdWIvbW9kdWxlZmlsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsfQ==";' export '_ModuleTable001_;' '_ModuleTable_Sz_="1";' export '_ModuleTable_Sz_;' +++ MODULEPATH=/opt/ohpc/pub/modulefiles +++ export MODULEPATH +++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9vcHQvb2hwYy9wdWIvbW9kdWxlZmlsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL29wdC9vaHBjL3B1Yi9tb2R1bGVmaWxlcyIsfQ== +++ export _ModuleTable001_ +++ _ModuleTable_Sz_=1 +++ export _ModuleTable_Sz_ +++ : -s sh ++ eval ++ module load gnu7 +++ /opt/ohpc/admin/lmod/lmod/libexec/lmod bash load gnu7 ++ eval '__LMOD_REF_COUNT_INCLUDE="/opt/ohpc/pub/compiler/gcc/7.2.0/include:1";' export '__LMOD_REF_COUNT_INCLUDE;' 'INCLUDE="/opt/ohpc/pub/compiler/gcc/7.2.0/include";' export 'INCLUDE;' '__LMOD_REF_COUNT_LD_LIBRARY_PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/lib64:1";' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/lib64";' export 'LD_LIBRARY_PATH;' 'LMOD_FAMILY_COMPILER="gnu7";' export 'LMOD_FAMILY_COMPILER;' 'LMOD_FAMILY_COMPILER_VERSION="7.2.0";' export 'LMOD_FAMILY_COMPILER_VERSION;' '__LMOD_REF_COUNT_LOADEDMODULES="gnu7/7.2.0:1";' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES="gnu7/7.2.0";' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH="/opt/ohpc/pub/compiler/gcc/7.2.0/share/man:1";' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH="/opt/ohpc/pub/compiler/gcc/7.2.0/share/man";' export 'MANPATH;' 'MODULEPATH="/opt/ohpc/pub/moduledeps/gnu7:/opt/ohpc/pub/modulefiles";' export 'MODULEPATH;' '__LMOD_REF_COUNT_PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1";' export '__LMOD_REF_COUNT_PATH;' 'PATH="/opt/ohpc/pub/compiler/gcc/7.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin";' export 'PATH;' '__LMOD_REF_COUNT__LMFILES_="/opt/ohpc/pub/modulefiles/gnu7/7.2.0:1";' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_="/opt/ohpc/pub/modulefiles/gnu7/7.2.0";' export '_LMFILES_;' '_ModuleTable001_="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";' export '_ModuleTable001_;' '_ModuleTable002_="Yy9wdWIvbW9kdWxlZmlsZXMiLH0=";' export '_ModuleTable002_;' '_ModuleTable_Sz_="2";' export '_ModuleTable_Sz_;' +++ __LMOD_REF_COUNT_INCLUDE=/opt/ohpc/pub/compiler/gcc/7.2.0/include:1 +++ export __LMOD_REF_COUNT_INCLUDE +++ INCLUDE=/opt/ohpc/pub/compiler/gcc/7.2.0/include +++ export INCLUDE +++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/opt/ohpc/pub/compiler/gcc/7.2.0/lib64:1 +++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH +++ LD_LIBRARY_PATH=/opt/ohpc/pub/compiler/gcc/7.2.0/lib64 +++ export LD_LIBRARY_PATH +++ LMOD_FAMILY_COMPILER=gnu7 +++ export LMOD_FAMILY_COMPILER +++ LMOD_FAMILY_COMPILER_VERSION=7.2.0 +++ export LMOD_FAMILY_COMPILER_VERSION +++ __LMOD_REF_COUNT_LOADEDMODULES=gnu7/7.2.0:1 +++ export __LMOD_REF_COUNT_LOADEDMODULES +++ LOADEDMODULES=gnu7/7.2.0 +++ export LOADEDMODULES +++ __LMOD_REF_COUNT_MANPATH=/opt/ohpc/pub/compiler/gcc/7.2.0/share/man:1 +++ export __LMOD_REF_COUNT_MANPATH +++ MANPATH=/opt/ohpc/pub/compiler/gcc/7.2.0/share/man +++ export MANPATH +++ MODULEPATH=/opt/ohpc/pub/moduledeps/gnu7:/opt/ohpc/pub/modulefiles +++ export MODULEPATH +++ __LMOD_REF_COUNT_PATH='/opt/ohpc/pub/compiler/gcc/7.2.0/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' +++ export __LMOD_REF_COUNT_PATH +++ PATH=/opt/ohpc/pub/compiler/gcc/7.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin +++ export PATH +++ __LMOD_REF_COUNT__LMFILES_=/opt/ohpc/pub/modulefiles/gnu7/7.2.0:1 +++ export __LMOD_REF_COUNT__LMFILES_ +++ _LMFILES_=/opt/ohpc/pub/modulefiles/gnu7/7.2.0 +++ export _LMFILES_ +++ _ModuleTable001_=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 +++ export _ModuleTable001_ +++ _ModuleTable002_=Yy9wdWIvbW9kdWxlZmlsZXMiLH0= +++ export _ModuleTable002_ +++ _ModuleTable_Sz_=2 +++ export _ModuleTable_Sz_ +++ : -s sh ++ eval + make DESTDIR=/builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 install mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/m4' make[1]: Nothing to be done for `install'. make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/m4' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/tools' make[1]: Nothing to be done for `install'. make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/tools' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc' installing doc ... mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/doc mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/share/man/man1 make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc/html' installing doc/html ... mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/doc/html make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc/html' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/doc/manual' installing doc/manual ... mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/doc/manual mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/doc/manual/images make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc/manual' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/doc' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/etc' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/etc installing etc ... make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/etc' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/share' installing share ... mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/R mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/dictionaries mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/encodings mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/java mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/licenses mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/make mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/Rd mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/Rd/macros mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/sh mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/texmf mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/texmf/bibtex/bib mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/texmf/bibtex/bst mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/share/texmf/tex/latex make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/share' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/src' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/scripts' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/bin mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/bin make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/scripts' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/include' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/include make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/include/R_ext' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/include/R_ext make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/include/R_ext' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/include' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra/blas' make[3]: Nothing to be done for `install'. make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra/blas' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' make[3]: Nothing to be done for `install'. make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra/tre' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra/xdr' make[3]: Nothing to be done for `install'. make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra/xdr' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/extra/intl' make[3]: Nothing to be done for `install'. make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra/intl' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/extra' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/appl' make[2]: Nothing to be done for `install'. make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/appl' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/nmath' make[2]: Nothing to be done for `install'. make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/nmath' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -L/usr/local/lib64 -DR_HOME='"/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R"' \ -o Rscript ./Rscript.c mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/pkgconfig make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/unix' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/bin/exec make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/main' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/lib make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/main' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/modules make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/internet' make[3]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' make[3]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules/lapack' make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/modules' make[2]: Entering directory `/builddir/build/BUILD/R-3.4.2/src/library' mkdir -p -- /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/libs/gnu7/R/3.4.2/lib64/R/library installing packages ... building HTML index ... make[2]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src/library' make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/src' make[1]: Entering directory `/builddir/build/BUILD/R-3.4.2/tests' make[1]: Nothing to be done for `install'. make[1]: Leaving directory `/builddir/build/BUILD/R-3.4.2/tests' + /usr/bin/rm -f /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/usr/lib64/R/library/survival/NEWS.Rd.orig + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/moduledeps/gnu7/R + /usr/bin/cat + /usr/bin/cat + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64//opt/ohpc/pub/doc/contrib + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip /usr/bin/strip + /usr/lib/rpm/redhat/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.W58fq3 + umask 022 + cd /builddir/build/BUILD + cd R-3.4.2 + DOCDIR=/builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/doc/contrib/R-gnu7-ohpc-3.4.2 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/doc/contrib/R-gnu7-ohpc-3.4.2 + cp -pr ChangeLog /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/doc/contrib/R-gnu7-ohpc-3.4.2 + cp -pr COPYING /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/doc/contrib/R-gnu7-ohpc-3.4.2 + cp -pr README /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64/opt/ohpc/pub/doc/contrib/R-gnu7-ohpc-3.4.2 + exit 0 Provides: R = 3.4.2 R-KernSmooth = 2.23.14 R-MASS = 7.3.39 R-Matrix = 1.1.5 R-boot = 1.3.15 R-class = 7.3.12 R-cluster = 2.0.1 R-codetools = 0.2.10 R-compiler = 3.4.2 R-datasets = 3.4.2 R-foreign = 0.8.63 R-gnu7-ohpc = 3.4.2-1.ohpc R-gnu7-ohpc(x86-64) = 3.4.2-1.ohpc R-grDevices = 3.4.2 R-graphics = 3.4.2 R-grid = 3.4.2 R-lattice = 0.20.30 R-methods = 3.4.2 R-mgcv = 1.8.4 R-nlme = 3.1.120 R-nnet = 7.3.9 R-parallel = 3.4.2 R-rpart = 4.1.9 R-spatial = 7.3.9 R-splines = 3.4.2 R-stats = 3.4.2 R-stats4 = 3.4.2 R-survival = 2.38.1 R-tcltk = 3.4.2 R-tools = 3.4.2 R-utils = 3.4.2 libR.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.2.5)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.16)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.6)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.2.5)(64bit) libgfortran.so.4()(64bit) libglib-2.0.so.0()(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.50()(64bit) libicuuc.so.50()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libopenblas.so.0()(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre.so.1()(64bit) libpng15.so.15()(64bit) libpng15.so.15(PNG15_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libquadmath.so.0()(64bit) libreadline.so.6()(64bit) librt.so.1()(64bit) librt.so.1(GLIBC_2.2.5)(64bit) libtcl8.5.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtk8.5.so()(64bit) libz.so.1()(64bit) Obsoletes: R-Matrix < 1.1.5 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 Wrote: /builddir/build/RPMS/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.QsBg9k + umask 022 + cd /builddir/build/BUILD + cd R-3.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-gnu7-ohpc-3.4.2-1.ohpc.x86_64 + exit 0 Child return code was: 0 LEAVE do -->